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Marine Genomics
Methods and Protocols
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Main description:

This volume presents the latest protocols for both laboratory and
bioinformatics based analyses in the field of marine genomics. The chapters
presented in the book cover a wide range of topics, including the sampling and
genomics of bacterial communities, DNA extraction in marine organisms,
high-throughput sequencing of whole mitochondrial genomes, phylogenomics, SNP
discovery, SNP-arrays for species identification, digital PCR-based
quantification methods, environment DNA for invasive species surveillance and
monitoring, microarrays for the detection of waterborne pathogens, DNA
barcoding of marine biodiversity, metabarcoding protocols for marine
eukaryotes, analytical protocols for the visualization of eukaryotic diversity,
and applications for genomic data to benthic indices for environmental
monitoring. Written in the highly successful Methods in Molecular Biology
series format, chapters include introduction to their respective topics, lists
of the necessary materials and reagents, step-by-step, readily reproducible
laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Cutting-edge and thorough, Marine Genomics: Methods and Protocols is a
valuable resource for researchers, students, and policy makers in the field of
marine biology.


Contents:

1.
Sampling
of Riverine or Marine Bacterial Communities in Remote Locations: From Field to PublicationKatja
Lehmann2. DNA Extraction Protocols for Whole Genome Sequencing
in Marine OrganismsMarina Panova, Henrik Aronsson, R. Andrew
Cameron, Peter Dahl, Anna Godhe, Ulrika Lind, Olga Ortega-Martinez, Ricardo
Pereyra, Sylvie V. M. Tesson, Anna-Lisa Wrange, Anders Blomberg, Kerstin
Johannesson3. High-Throughput
Sequencing of Complete Mitochondrial GenomesAndrew George Briscoe,
Kevin Peter Hopkins, and Andrea Waeschenbach4. Phylogenomics
Using Transcriptome DataJohanna Taylor Cannon and Kevin Michael Kocot5.
SNP
Discovery Using Next Generation Transcriptomic SequencingPierre de Wit6.
SNP-Arrays for Species Identification in
SalmonidsRoman Wenne, Agata Drywa, Matthew Kent,
Kristil Kindem Sundsaasen, Sigbjorn Lien7.
The
Next Generation PCR-Based Quantification Method for Ambient Waters: Digital PCRYiping Cao, John F. Griffith, and
Stephen B. Weisberg8.
Using Environmental DNA for Invasive Species
Surveillance and MonitoringAndrew R. Mahon and Christopher L. Jerde9.
Microarrays/DNA Chips for the Detection
of Waterborne PathogensDNA Barcoding of Marine MetazoansDirk Steinke, Sean W.J. Prosser, and
Paul D.N. Hebert11.
DNA Barcoding Marine Biodiversity: Steps
from Mere Cataloguing to Giving Reasons for Biological DifferencesMikko Nikinmaa
and Miriam Gotting12. Metabarcoding Marine Sediments: Preparation of Amplicon LibrariesVera G. Fonseca and
Delphine Lallias13.
Preparation of Amplicon Libraries for Metabarcoding
of Marine Eukaryotes Using Illumina MiSeq: The Dual-PCR MethodSarah J. Bourlat, Quiterie Haenel, Jennie
Finnman, and Matthieu Leray14.
Preparation of Amplicon Libraries for Metabarcoding
of Marine Eukaryotes Using Illumina MiSeq: The Adaptor-Ligation MethodMatthieu Leray,
Quiterie Haenel, and Sarah J. Bourlat15.
Visualizing Patterns of Marine Eukaryotic
Diversity from Metabarcoding Data Using QIIMEMatthieu Leray and Nancy Knowlton16. Analysis
of Illumina MiSeq Metabarcoding Data: Application to Benthic Indices for Environmental
MonitoringEva Aylagas and Naiara Rodriguez-Ezpeleta


PRODUCT DETAILS

ISBN-13: 9781493937721
Publisher: Springer (Humana Press Inc.)
Publication date: July, 2016
Pages: 270
Weight: 696g
Availability: Contact supplier
Subcategories: Genetics

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